Information biology - a dialogue between informatics and biology

Representing biological information : statistical aspects of mapping sequences to structures ; the case of RNA

Inheriting biological information : transmission limits

The Evolution of Cellular Individuality

Modeling biological information processing
I. Tools for reasoning about molecular interaction systems : Introduction

Graph Rewriting and Chemistry

Modeling biological information processing
II. Tools for reasoning about molecular interaction systems : use cases

From Molecules to Systems: the problem of knowledge representation in molecular biology

Modeling biological information processing
III. Tools for reasoning about molecular interaction systems : The quest for useful information

Easy and Hard in the Origin of Life

Modeling biological information processing
IV. Combinatorics assembly systems in molecular signalling : combinatorics scaffolding

Modeling biological information processing
V. Combinatorics assembly systems in molecular signalling : statistical mechanics

Cells as Cognitive Creatures

The acquisition of biological information : learning in molecular systems ?

Thermodynamics of Open Chemical Reaction Networks: Theory and applications

Prediction in Immune Repertoires

Imaging Subcellular Dynamics from Molecules to Multicellular Organisms